IL_5NDK_263
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GCU*AAAC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDK_263 not in the Motif Atlas
- Geometric match to IL_7RQB_031
- Geometric discrepancy: 0.1993
- The information below is about IL_7RQB_031
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_46796.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
5NDK|1|1H|G|924
5NDK|1|1H|C|925
5NDK|1|1H|U|926
*
5NDK|1|1H|A|947
5NDK|1|1H|A|948
5NDK|1|1H|A|949
5NDK|1|1H|C|950
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 88
- 50S ribosomal protein L16
- Chain H8
- 50S ribosomal protein L25
Coloring options: