IL_5NDK_274
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CGAAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 5NDK|1|1H|A|1094
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDK_274 not in the Motif Atlas
- Homologous match to IL_5J7L_284
- Geometric discrepancy: 0.1238
- The information below is about IL_5J7L_284
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
5NDK|1|1H|C|1091
5NDK|1|1H|G|1092
5NDK|1|1H|A|1093
5NDK|1|1H|A|1094
5NDK|1|1H|G|1095
5NDK|1|1H|A|1096
5NDK|1|1H|C|1097
5NDK|1|1H|A|1098
5NDK|1|1H|G|1099
*
5NDK|1|1H|U|1156
5NDK|1|1H|C|1157
5NDK|1|1H|G|1158
5NDK|1|1H|A|1159
5NDK|1|1H|G|1160
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 51
- 50S ribosomal protein L6
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