IL_5NDK_363
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CGCUGAC*GGUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 5NDK|1|1H|G|979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDK_363 not in the Motif Atlas
- Homologous match to IL_9DFE_024
- Geometric discrepancy: 0.1249
- The information below is about IL_9DFE_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_68243.1
- Basepair signature
- cWW-L-cWW-cWW-R-L-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
5NDK|1|1H|C|893
5NDK|1|1H|G|894
5NDK|1|1H|C|895
5NDK|1|1H|U|896
5NDK|1|1H|G|897
5NDK|1|1H|A|898
5NDK|1|1H|C|899
*
5NDK|1|1H|G|975
5NDK|1|1H|G|976
5NDK|1|1H|U|977
5NDK|1|1H|G|978
5NDK|1|1H|G|979
5NDK|1|1H|A|980
5NDK|1|1H|G|981
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain L8
- 50S ribosomal protein L30
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