IL_5NDK_364
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- UGUAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDK_364 not in the Motif Atlas
- Homologous match to IL_9DFE_026
- Geometric discrepancy: 0.1675
- The information below is about IL_9DFE_026
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_38862.4
- Basepair signature
- cWW-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5NDK|1|1H|U|907
5NDK|1|1H|G|908
5NDK|1|1H|U|909
5NDK|1|1H|A|910
5NDK|1|1H|G|911
*
5NDK|1|1H|C|963
5NDK|1|1H|G|964
5NDK|1|1H|A|965
5NDK|1|1H|A|966
5NDK|1|1H|G|967
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 16
- 5S ribosomal RNA; 5S rRNA
- Chain 88
- 50S ribosomal protein L16
- Chain I8
- 50S ribosomal protein L27
- Chain L8
- 50S ribosomal protein L30
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