IL_5NDV_011
3D structure
- PDB id
- 5NDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Paromomycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GUU*AGUGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDV_011 not in the Motif Atlas
- Geometric match to IL_5U3G_002
- Geometric discrepancy: 0.3033
- The information below is about IL_5U3G_002
- Detailed Annotation
- 8-nt loop receptor
- Broad Annotation
- Loop-receptor motif
- Motif group
- IL_83497.1
- Basepair signature
- cWW-L-R-cSH-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
5NDV|1|1|G|176
5NDV|1|1|U|177
5NDV|1|1|U|178
*
5NDV|1|1|A|238
5NDV|1|1|G|239
5NDV|1|1|U|240
5NDV|1|1|G|241
5NDV|1|1|C|242
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain M3
- 60S ribosomal protein L13-A
- Chain O5
- 60S ribosomal protein L35-A
- Chain O7
- 60S ribosomal protein L37-A
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