IL_5NDV_023
3D structure
- PDB id
- 5NDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Paromomycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGGGC*GUGCAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDV_023 not in the Motif Atlas
- Geometric match to IL_5J7L_063
- Geometric discrepancy: 0.25
- The information below is about IL_5J7L_063
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_80231.1
- Basepair signature
- cWW-L-R-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
5NDV|1|1|G|725
5NDV|1|1|G|726
5NDV|1|1|G|727
5NDV|1|1|G|728
5NDV|1|1|C|729
*
5NDV|1|1|G|740
5NDV|1|1|U|741
5NDV|1|1|G|742
5NDV|1|1|C|743
5NDV|1|1|A|744
5NDV|1|1|C|745
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain M8
- 60S ribosomal protein L18-A
- Chain N9
- 60S ribosomal protein L29
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