IL_5NDV_028
3D structure
- PDB id
- 5NDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Paromomycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 5NDV|1|1|A|933, 5NDV|1|1|G|937
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDV_028 not in the Motif Atlas
- Homologous match to IL_5TBW_028
- Geometric discrepancy: 0.0608
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
5NDV|1|1|G|805
5NDV|1|1|A|806
5NDV|1|1|A|807
5NDV|1|1|A|808
5NDV|1|1|G|809
*
5NDV|1|1|C|931
5NDV|1|1|U|932
5NDV|1|1|A|933
5NDV|1|1|G|934
5NDV|1|1|U|935
5NDV|1|1|A|936
5NDV|1|1|G|937
5NDV|1|1|C|938
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L4
- 60S ribosomal protein L4-A
- Chain M3
- 60S ribosomal protein L13-A
- Chain M5
- 60S ribosomal protein L15-A
- Chain N8
- 60S ribosomal protein L28
- Chain O7
- 60S ribosomal protein L37-A
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