IL_5NDV_042
3D structure
- PDB id
- 5NDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Paromomycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GUUCCG*UGAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDV_042 not in the Motif Atlas
- Homologous match to IL_5TBW_043
- Geometric discrepancy: 0.2252
- The information below is about IL_5TBW_043
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_71110.1
- Basepair signature
- cWW-cWW-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
5NDV|1|1|G|1013
5NDV|1|1|U|1014
5NDV|1|1|U|1015
5NDV|1|1|C|1016
5NDV|1|1|C|1017
5NDV|1|1|G|1018
*
5NDV|1|1|U|1034
5NDV|1|1|G|1035
5NDV|1|1|A|1036
5NDV|1|1|C|1037
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L5
- 60S ribosomal protein L5
- Chain M0
- 60S ribosomal protein L10
- Chain M1
- 60S ribosomal protein L11-B
- Chain SM
- Suppressor protein STM1
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