IL_5NDV_070
3D structure
- PDB id
- 5NDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Paromomycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UUAUCA*UCUUAUG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDV_070 not in the Motif Atlas
- Homologous match to IL_8C3A_078
- Geometric discrepancy: 0.5202
- The information below is about IL_8C3A_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_39753.2
- Basepair signature
- cWW-L-R-tWH-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5NDV|1|1|U|1702
5NDV|1|1|U|1703
5NDV|1|1|A|1704
5NDV|1|1|U|1705
5NDV|1|1|C|1706
5NDV|1|1|A|1707
*
5NDV|1|1|U|1737
5NDV|1|1|C|1738
5NDV|1|1|U|1739
5NDV|1|1|U|1740
5NDV|1|1|A|1741
5NDV|1|1|U|1742
5NDV|1|1|G|1743
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain O4
- 60S ribosomal protein L34-A
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