IL_5NDV_160
3D structure
- PDB id
- 5NDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Paromomycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 5NDV|1|2|A|579
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDV_160 not in the Motif Atlas
- Homologous match to IL_8C3A_425
- Geometric discrepancy: 0.1787
- The information below is about IL_8C3A_425
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.2
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5NDV|1|2|G|562
5NDV|1|2|U|563
5NDV|1|2|G|564
5NDV|1|2|C|565
5NDV|1|2|C|566
5NDV|1|2|A|567
5NDV|1|2|G|568
*
5NDV|1|2|C|575
5NDV|1|2|G|576
5NDV|1|2|G|577
5NDV|1|2|U|578
5NDV|1|2|A|579
5NDV|1|2|A|580
5NDV|1|2|U|581
5NDV|1|2|U|582
5NDV|1|2|C|583
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain D3
- 40S ribosomal protein S23-A
- Chain E0
- 40S ribosomal protein S30-A
- Chain S3
- 40S ribosomal protein S3
- Chain SM
- Suppressor protein STM1
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