IL_5NDV_375
3D structure
- PDB id
- 5NDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Paromomycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UAUCAA*UUUCAACG
- Length
- 14 nucleotides
- Bulged bases
- 5NDV|1|6|U|313, 5NDV|1|6|C|351
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDV_375 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.0661
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
5NDV|1|6|U|311
5NDV|1|6|A|312
5NDV|1|6|U|313
5NDV|1|6|C|314
5NDV|1|6|A|315
5NDV|1|6|A|316
*
5NDV|1|6|U|348
5NDV|1|6|U|349
5NDV|1|6|U|350
5NDV|1|6|C|351
5NDV|1|6|A|352
5NDV|1|6|A|353
5NDV|1|6|C|354
5NDV|1|6|G|355
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c1
- 40S ribosomal protein S11-A
- Chain d3
- 40S ribosomal protein S23-A
- Chain s8
- 40S ribosomal protein S8-A
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