IL_5NDV_433
3D structure
- PDB id
- 5NDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Paromomycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGCU*AAAG*G
- Length
- 9 nucleotides
- Bulged bases
- 5NDV|1|6|A|1755
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDV_433 not in the Motif Atlas
- Geometric match to IL_1G1X_006
- Geometric discrepancy: 0.3643
- The information below is about IL_1G1X_006
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
5NDV|1|6|C|1644
5NDV|1|6|G|1645
5NDV|1|6|C|1646
5NDV|1|6|U|1647
*
5NDV|1|6|A|1753
5NDV|1|6|A|1754
5NDV|1|6|A|1755
5NDV|1|6|G|1757
*
5NDV|1|6|G|1757
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain d3
- 40S ribosomal protein S23-A
- Chain e0
- 40S ribosomal protein S30-A
- Chain q1
- 60S ribosomal protein L41-B
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