IL_5NDV_492
3D structure
- PDB id
- 5NDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Paromomycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GUAU*AGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDV_492 not in the Motif Atlas
- Homologous match to IL_8P9A_421
- Geometric discrepancy: 0.1158
- The information below is about IL_8P9A_421
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
5NDV|1|6|G|885
5NDV|1|6|U|886
5NDV|1|6|A|887
5NDV|1|6|U|888
*
5NDV|1|6|A|924
5NDV|1|6|G|925
5NDV|1|6|A|926
5NDV|1|6|C|927
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c4
- 40S ribosomal protein S14-B
- Chain d6
- 40S ribosomal protein S26-B
- Chain l2
- 60S ribosomal protein L2-A
- Chain q3
- 60S ribosomal protein L43-A
- Chain s1
- 40S ribosomal protein S1-A
Coloring options: