IL_5NDW_020
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GAAUGUAG*UAUUAUAGC
- Length
- 17 nucleotides
- Bulged bases
- 5NDW|1|1|U|534, 5NDW|1|1|U|558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDW_020 not in the Motif Atlas
- Homologous match to IL_5TBW_020
- Geometric discrepancy: 0.0669
- The information below is about IL_5TBW_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07703.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5NDW|1|1|G|531
5NDW|1|1|A|532
5NDW|1|1|A|533
5NDW|1|1|U|534
5NDW|1|1|G|535
5NDW|1|1|U|536
5NDW|1|1|A|537
5NDW|1|1|G|538
*
5NDW|1|1|U|553
5NDW|1|1|A|554
5NDW|1|1|U|555
5NDW|1|1|U|556
5NDW|1|1|A|557
5NDW|1|1|U|558
5NDW|1|1|A|559
5NDW|1|1|G|560
5NDW|1|1|C|561
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain M4
- 60S ribosomal protein L14-A
- Chain N0
- 60S ribosomal protein L20-A
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