IL_5NDW_055
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- UCUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 5NDW|1|1|A|1221
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDW_055 not in the Motif Atlas
- Homologous match to IL_5TBW_054
- Geometric discrepancy: 0.2108
- The information below is about IL_5TBW_054
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90538.5
- Basepair signature
- cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
5NDW|1|1|U|1218
5NDW|1|1|C|1219
5NDW|1|1|U|1220
5NDW|1|1|A|1221
5NDW|1|1|G|1222
5NDW|1|1|A|1223
5NDW|1|1|C|1224
5NDW|1|1|A|1225
5NDW|1|1|G|1226
*
5NDW|1|1|C|1283
5NDW|1|1|C|1284
5NDW|1|1|G|1285
5NDW|1|1|A|1286
5NDW|1|1|A|1287
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain N0
- 60S ribosomal protein L20-A
Coloring options: