IL_5NDW_096
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- UUGA*UACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDW_096 not in the Motif Atlas
- Homologous match to IL_5TBW_100
- Geometric discrepancy: 0.0807
- The information below is about IL_5TBW_100
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
5NDW|1|1|U|2718
5NDW|1|1|U|2719
5NDW|1|1|G|2720
5NDW|1|1|A|2721
*
5NDW|1|1|U|2735
5NDW|1|1|A|2736
5NDW|1|1|C|2737
5NDW|1|1|A|2738
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L5
- 60S ribosomal protein L5
- Chain M8
- 60S ribosomal protein L18-A
- Chain N1
- 60S ribosomal protein L21-A
- Chain N9
- 60S ribosomal protein L29
- Chain Q2
- 60S ribosomal protein L42-A
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