IL_5NDW_255
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 5NDW|1|5|A|933, 5NDW|1|5|G|937
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDW_255 not in the Motif Atlas
- Geometric match to IL_5TBW_028
- Geometric discrepancy: 0.0704
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
5NDW|1|5|G|805
5NDW|1|5|A|806
5NDW|1|5|A|807
5NDW|1|5|A|808
5NDW|1|5|G|809
*
5NDW|1|5|C|931
5NDW|1|5|U|932
5NDW|1|5|A|933
5NDW|1|5|G|934
5NDW|1|5|U|935
5NDW|1|5|A|936
5NDW|1|5|G|937
5NDW|1|5|C|938
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l4
- 60S ribosomal protein L4-A
- Chain m3
- 60S ribosomal protein L13-A
- Chain m5
- 60S ribosomal protein L15-A
- Chain n8
- 60S ribosomal protein L28
- Chain o7
- 60S ribosomal protein L37-A
Coloring options: