IL_5NDW_261
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 5NDW|1|5|G|908, 5NDW|1|5|A|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDW_261 not in the Motif Atlas
- Geometric match to IL_5TBW_033
- Geometric discrepancy: 0.1144
- The information below is about IL_5TBW_033
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
5NDW|1|5|G|907
5NDW|1|5|G|908
5NDW|1|5|G|909
*
5NDW|1|5|U|919
5NDW|1|5|A|920
5NDW|1|5|A|921
5NDW|1|5|U|922
5NDW|1|5|C|923
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l2
- 60S ribosomal protein L2-A
- Chain m5
- 60S ribosomal protein L15-A
- Chain m7
- 60S ribosomal protein L17-A
- Chain o7
- 60S ribosomal protein L37-A
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