IL_5NDW_266
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GAGGUAA*UAAAUAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDW_266 not in the Motif Atlas
- Geometric match to IL_5TBW_038
- Geometric discrepancy: 0.0658
- The information below is about IL_5TBW_038
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93830.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5NDW|1|5|G|991
5NDW|1|5|A|992
5NDW|1|5|G|993
5NDW|1|5|G|994
5NDW|1|5|U|995
5NDW|1|5|A|996
5NDW|1|5|A|997
*
5NDW|1|5|U|1052
5NDW|1|5|A|1053
5NDW|1|5|A|1054
5NDW|1|5|A|1055
5NDW|1|5|U|1056
5NDW|1|5|A|1057
5NDW|1|5|U|1058
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain l5
- 60S ribosomal protein L5
- Chain l7
- 60S ribosomal protein L7-A
- Chain m0
- 60S ribosomal protein L10
- Chain n0
- 60S ribosomal protein L20-A
- Chain n1
- 60S ribosomal protein L21-A
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