IL_5NDW_289
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GUCAAC*GGAC
- Length
- 10 nucleotides
- Bulged bases
- 5NDW|1|5|G|1514
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDW_289 not in the Motif Atlas
- Homologous match to IL_5TBW_062
- Geometric discrepancy: 0.0758
- The information below is about IL_5TBW_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_51005.1
- Basepair signature
- cWW-L-R-tWH-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
5NDW|1|5|G|1500
5NDW|1|5|U|1501
5NDW|1|5|C|1502
5NDW|1|5|A|1503
5NDW|1|5|A|1504
5NDW|1|5|C|1505
*
5NDW|1|5|G|1513
5NDW|1|5|G|1514
5NDW|1|5|A|1515
5NDW|1|5|C|1516
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain m7
- 60S ribosomal protein L17-A
- Chain m9
- 60S ribosomal protein L19-A
- Chain o9
- 60S ribosomal protein L39
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