IL_5NDW_394
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 5NDW|1|6|A|579, 5NDW|1|6|U|581, 5NDW|1|6|U|582
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDW_394 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.0737
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5NDW|1|6|G|562
5NDW|1|6|U|563
5NDW|1|6|G|564
5NDW|1|6|C|565
5NDW|1|6|C|566
5NDW|1|6|A|567
5NDW|1|6|G|568
*
5NDW|1|6|C|575
5NDW|1|6|G|576
5NDW|1|6|G|577
5NDW|1|6|U|578
5NDW|1|6|A|579
5NDW|1|6|A|580
5NDW|1|6|U|581
5NDW|1|6|U|582
5NDW|1|6|C|583
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain d3
- 40S ribosomal protein S23-A
- Chain e0
- 40S ribosomal protein S30-A
- Chain s3
- 40S ribosomal protein S3
- Chain sM
- Suppressor protein STM1
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