IL_5NDW_411
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDW_411 not in the Motif Atlas
- Geometric match to IL_4V88_436
- Geometric discrepancy: 0.0779
- The information below is about IL_4V88_436
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
5NDW|1|6|C|990
5NDW|1|6|G|991
5NDW|1|6|A|992
5NDW|1|6|A|993
5NDW|1|6|G|994
*
5NDW|1|6|C|1010
5NDW|1|6|G|1011
5NDW|1|6|U|1012
5NDW|1|6|A|1013
5NDW|1|6|G|1014
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain c4
- 40S ribosomal protein S14-B
- Chain d6
- 40S ribosomal protein S26-B
- Chain l2
- 60S ribosomal protein L2-A
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