IL_5NDW_470
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 5NDW|1|2|C|1274, 5NDW|1|2|U|1432, 5NDW|1|2|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDW_470 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.0917
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5NDW|1|2|U|1272
5NDW|1|2|G|1273
5NDW|1|2|C|1274
5NDW|1|2|A|1275
5NDW|1|2|U|1276
5NDW|1|2|G|1277
5NDW|1|2|G|1278
*
5NDW|1|2|U|1430
5NDW|1|2|C|1431
5NDW|1|2|U|1432
5NDW|1|2|G|1433
5NDW|1|2|U|1434
5NDW|1|2|G|1435
5NDW|1|2|A|1436
5NDW|1|2|U|1437
5NDW|1|2|G|1438
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C0
- 40S ribosomal protein S10-A
- Chain D0
- 40S ribosomal protein S20
- Chain D9
- 40S ribosomal protein S29-A
- Chain S3
- 40S ribosomal protein S3
- Chain SM
- Suppressor protein STM1
Coloring options: