IL_5NG8_034
3D structure
- PDB id
- 5NG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- CUAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- 5NG8|1|AA|A|1200
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NG8_034 not in the Motif Atlas
- Geometric match to IL_4WF9_036
- Geometric discrepancy: 0.0755
- The information below is about IL_4WF9_036
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_08938.1
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 22
Unit IDs
5NG8|1|AA|C|1042
5NG8|1|AA|U|1043
5NG8|1|AA|A|1044
5NG8|1|AA|A|1045
5NG8|1|AA|G|1046
*
5NG8|1|AA|C|1197
5NG8|1|AA|G|1198
5NG8|1|AA|A|1199
5NG8|1|AA|A|1200
5NG8|1|AA|G|1201
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AB
- 5S ribosomal RNA; 5S rRNA
- Chain AO
- 50S ribosomal protein L20
- Chain AP
- 50S ribosomal protein L21
- Chain AX
- 50S ribosomal protein L30
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