IL_5NG8_141

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_141 not in the Motif Atlas

Geometric match to IL_4LFB_034

Geometric discrepancy: 0.1289

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

5NG8|1|Aa|G|896
5NG8|1|Aa|G|897
5NG8|1|Aa|A|898
5NG8|1|Aa|G|899
5NG8|1|Aa|U|900
5NG8|1|Aa|A|901
5NG8|1|Aa|C|902
5NG8|1|Aa|G|903
*
5NG8|1|Aa|U|914
5NG8|1|Aa|G|915
5NG8|1|Aa|A|916
5NG8|1|Aa|A|917
5NG8|1|Aa|A|918
5NG8|1|Aa|C|919

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Al

30S ribosomal protein S12