IL_5NG8_285
3D structure
- PDB id
- 5NG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- CAUUAG*CAACGAUG
- Length
- 14 nucleotides
- Bulged bases
- 5NG8|1|Ba|U|252, 5NG8|1|Ba|C|288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NG8_285 not in the Motif Atlas
- Geometric match to IL_4LFB_011
- Geometric discrepancy: 0.1779
- The information below is about IL_4LFB_011
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.4
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
5NG8|1|Ba|C|250
5NG8|1|Ba|A|251
5NG8|1|Ba|U|252
5NG8|1|Ba|U|253
5NG8|1|Ba|A|254
5NG8|1|Ba|G|255
*
5NG8|1|Ba|C|285
5NG8|1|Ba|A|286
5NG8|1|Ba|A|287
5NG8|1|Ba|C|288
5NG8|1|Ba|G|289
5NG8|1|Ba|A|290
5NG8|1|Ba|U|291
5NG8|1|Ba|G|292
Current chains
- Chain Ba
- 16S ribosomal RNA
Nearby chains
- Chain Bl
- 30S ribosomal protein S12
- Chain Bq
- 30S ribosomal protein S17
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