IL_5NG8_294

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

5NG8|1|Ba|A|540, 5NG8|1|Ba|U|542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NG8_294 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.2231

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5NG8|1|Ba|G|523
5NG8|1|Ba|U|524
5NG8|1|Ba|G|525
5NG8|1|Ba|C|526
5NG8|1|Ba|C|527
5NG8|1|Ba|A|528
5NG8|1|Ba|G|529
*
5NG8|1|Ba|C|536
5NG8|1|Ba|G|537
5NG8|1|Ba|G|538
5NG8|1|Ba|U|539
5NG8|1|Ba|A|540
5NG8|1|Ba|A|541
5NG8|1|Ba|U|542
5NG8|1|Ba|A|543
5NG8|1|Ba|C|544

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Bc

30S ribosomal protein S3

Chain Bd

30S ribosomal protein S4

Chain Bl

30S ribosomal protein S12

Chain Bv

Ribosome hibernation promotion factor