IL_5NG8_296
3D structure
- PDB id
- 5NG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- CGUAG*UGAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NG8_296 not in the Motif Atlas
- Geometric match to IL_4LFB_023
- Geometric discrepancy: 0.1492
- The information below is about IL_4LFB_023
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
5NG8|1|Ba|C|588
5NG8|1|Ba|G|589
5NG8|1|Ba|U|590
5NG8|1|Ba|A|591
5NG8|1|Ba|G|592
*
5NG8|1|Ba|U|765
5NG8|1|Ba|G|766
5NG8|1|Ba|A|767
5NG8|1|Ba|U|768
5NG8|1|Ba|G|769
Current chains
- Chain Ba
- 16S ribosomal RNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Bh
- 30S ribosomal protein S8
- Chain Bl
- 30S ribosomal protein S12
- Chain Bo
- 30S ribosomal protein S15
- Chain Bq
- 30S ribosomal protein S17
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