IL_5NG8_331
3D structure
- PDB id
- 5NG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- CCGAAG*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NG8_331 not in the Motif Atlas
- Geometric match to IL_5J7L_063
- Geometric discrepancy: 0.2092
- The information below is about IL_5J7L_063
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_80231.1
- Basepair signature
- cWW-L-R-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
5NG8|1|Ba|C|1440
5NG8|1|Ba|C|1441
5NG8|1|Ba|G|1442
5NG8|1|Ba|A|1443
5NG8|1|Ba|A|1444
5NG8|1|Ba|G|1445
*
5NG8|1|Ba|C|1477
5NG8|1|Ba|G|1478
5NG8|1|Ba|A|1479
5NG8|1|Ba|A|1480
5NG8|1|Ba|G|1481
Current chains
- Chain Ba
- 16S ribosomal RNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BI
- 50S ribosomal protein L14
- Chain BN
- 50S ribosomal protein L19
Coloring options: