IL_5NGM_001

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_001 not in the Motif Atlas

Homologous match to IL_4WF9_001

Geometric discrepancy: 0.0702

The information below is about IL_4WF9_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.7

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5NGM|1|AA|G|24
5NGM|1|AA|U|25
5NGM|1|AA|G|26
5NGM|1|AA|G|27
5NGM|1|AA|A|28
5NGM|1|AA|U|29
5NGM|1|AA|G|30
*
5NGM|1|AA|C|555
5NGM|1|AA|U|556
5NGM|1|AA|G|557
5NGM|1|AA|A|558
5NGM|1|AA|A|559
5NGM|1|AA|A|560
5NGM|1|AA|C|561

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AO

50S ribosomal protein L20

Chain AQ

50S ribosomal protein L22

Chain AZ

50S ribosomal protein L32