IL_5NGM_001
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases (A, C, G, U)
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NGM_001 not in the Motif Atlas
- Homologous match to IL_4WF9_001
- Geometric discrepancy: 0.0702
- The information below is about IL_4WF9_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5NGM|1|AA|G|24
5NGM|1|AA|U|25
5NGM|1|AA|G|26
5NGM|1|AA|G|27
5NGM|1|AA|A|28
5NGM|1|AA|U|29
5NGM|1|AA|G|30
*
5NGM|1|AA|C|555
5NGM|1|AA|U|556
5NGM|1|AA|G|557
5NGM|1|AA|A|558
5NGM|1|AA|A|559
5NGM|1|AA|A|560
5NGM|1|AA|C|561
Current chains
- Chain AA
- 23S Ribosomal RNA
Nearby chains
- Chain AO
- 50S ribosomal protein L20
- Chain AQ
- 50S ribosomal protein L22
- Chain AZ
- 50S ribosomal protein L32
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