IL_5NGM_008

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGAACUG*CUUAGUACC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_008 not in the Motif Atlas

Homologous match to IL_4WF9_008

Geometric discrepancy: 0.0751

The information below is about IL_4WF9_008

Detailed Annotation

9x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84694.2

Basepair signature

cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

5NGM|1|AA|G|190
5NGM|1|AA|A|191
5NGM|1|AA|G|192
5NGM|1|AA|A|193
5NGM|1|AA|A|194
5NGM|1|AA|C|195
5NGM|1|AA|U|196
5NGM|1|AA|G|197
*
5NGM|1|AA|C|204
5NGM|1|AA|U|205
5NGM|1|AA|U|206
5NGM|1|AA|A|207
5NGM|1|AA|G|208
5NGM|1|AA|U|209
5NGM|1|AA|A|210
5NGM|1|AA|C|211
5NGM|1|AA|C|212

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A2

50S ribosomal protein L34

Chain AJ

50S ribosomal protein L15

Chain AV

50S ribosomal protein L28