IL_5NGM_010

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AC*GGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_010 not in the Motif Atlas

Geometric match to IL_7RQB_073

Geometric discrepancy: 0.2154

The information below is about IL_7RQB_073

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_88739.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

5NGM|1|AA|A|305
5NGM|1|AA|C|306
*
5NGM|1|AA|G|409
5NGM|1|AA|G|410
5NGM|1|AA|A|411
5NGM|1|AA|U|412

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains