IL_5NGM_025

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCG*CAAUC

Length

8 nucleotides

Bulged bases

5NGM|1|AA|C|821, 5NGM|1|AA|A|833, 5NGM|1|AA|A|834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_025 not in the Motif Atlas

Homologous match to IL_5J7L_265

Geometric discrepancy: 0.0862

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

5NGM|1|AA|G|820
5NGM|1|AA|C|821
5NGM|1|AA|G|822
*
5NGM|1|AA|C|832
5NGM|1|AA|A|833
5NGM|1|AA|A|834
5NGM|1|AA|U|835
5NGM|1|AA|C|836

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A2

50S ribosomal protein L34

Chain AC

50S ribosomal protein L2

Chain AQ

50S ribosomal protein L22