IL_5NGM_026

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCC*GAGU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_026 not in the Motif Atlas

Geometric match to IL_8P9A_292

Geometric discrepancy: 0.3946

The information below is about IL_8P9A_292

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

5NGM|1|AA|G|881
5NGM|1|AA|C|882
5NGM|1|AA|C|883
*
5NGM|1|AA|G|984
5NGM|1|AA|A|985
5NGM|1|AA|G|986
5NGM|1|AA|U|987

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A3

50S ribosomal protein L35

Chain AJ

50S ribosomal protein L15