IL_5NGM_035

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCCCAAAA*UA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_035 not in the Motif Atlas

Homologous match to IL_5J7L_278

Geometric discrepancy: 0.1301

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

5NGM|1|AA|U|1048
5NGM|1|AA|C|1049
5NGM|1|AA|C|1050
5NGM|1|AA|C|1051
5NGM|1|AA|A|1052
5NGM|1|AA|A|1053
5NGM|1|AA|A|1054
5NGM|1|AA|A|1055
*
5NGM|1|AA|U|1194
5NGM|1|AA|A|1195

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AH

50S ribosomal protein L13

Chain AO

50S ribosomal protein L20