3D structure

PDB id
5NGM (explore in PDB, NAKB, or RNA 3D Hub)
Description
2.9S structure of the 70S ribosome composing the S. aureus 100S complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GGAAAAG*CGAAAAUGUACCGGGGC
Length
24 nucleotides
Bulged bases
5NGM|1|AA|A|1070, 5NGM|1|AA|A|1171, 5NGM|1|AA|U|1174, 5NGM|1|AA|C|1178
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5NGM_038 not in the Motif Atlas
Geometric match to IL_4WF9_040
Geometric discrepancy: 0.1254
The information below is about IL_4WF9_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

5NGM|1|AA|G|1068
5NGM|1|AA|G|1069
5NGM|1|AA|A|1070
5NGM|1|AA|A|1071
5NGM|1|AA|A|1072
5NGM|1|AA|A|1073
5NGM|1|AA|G|1074
*
5NGM|1|AA|C|1168
5NGM|1|AA|G|1169
5NGM|1|AA|A|1170
5NGM|1|AA|A|1171
5NGM|1|AA|A|1172
5NGM|1|AA|A|1173
5NGM|1|AA|U|1174
5NGM|1|AA|G|1175
5NGM|1|AA|U|1176
5NGM|1|AA|A|1177
5NGM|1|AA|C|1178
5NGM|1|AA|C|1179
5NGM|1|AA|G|1180
5NGM|1|AA|G|1181
5NGM|1|AA|G|1182
5NGM|1|AA|G|1183
5NGM|1|AA|C|1184

Current chains

Chain AA
23S Ribosomal RNA

Nearby chains

Chain A4
50S ribosomal protein L36
Chain AB
5S ribosomal RNA; 5S rRNA
Chain AD
50S ribosomal protein L3
Chain AH
50S ribosomal protein L13
Chain AK
50S ribosomal protein L16

Coloring options:


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