IL_5NGM_038
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAAAAG*CGAAAAUGUACCGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 5NGM|1|AA|A|1070, 5NGM|1|AA|A|1171, 5NGM|1|AA|U|1174, 5NGM|1|AA|C|1178
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NGM_038 not in the Motif Atlas
- Geometric match to IL_4WF9_040
- Geometric discrepancy: 0.1254
- The information below is about IL_4WF9_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
5NGM|1|AA|G|1068
5NGM|1|AA|G|1069
5NGM|1|AA|A|1070
5NGM|1|AA|A|1071
5NGM|1|AA|A|1072
5NGM|1|AA|A|1073
5NGM|1|AA|G|1074
*
5NGM|1|AA|C|1168
5NGM|1|AA|G|1169
5NGM|1|AA|A|1170
5NGM|1|AA|A|1171
5NGM|1|AA|A|1172
5NGM|1|AA|A|1173
5NGM|1|AA|U|1174
5NGM|1|AA|G|1175
5NGM|1|AA|U|1176
5NGM|1|AA|A|1177
5NGM|1|AA|C|1178
5NGM|1|AA|C|1179
5NGM|1|AA|G|1180
5NGM|1|AA|G|1181
5NGM|1|AA|G|1182
5NGM|1|AA|G|1183
5NGM|1|AA|C|1184
Current chains
- Chain AA
- 23S Ribosomal RNA
Nearby chains
- Chain A4
- 50S ribosomal protein L36
- Chain AB
- 5S ribosomal RNA; 5S rRNA
- Chain AD
- 50S ribosomal protein L3
- Chain AH
- 50S ribosomal protein L13
- Chain AK
- 50S ribosomal protein L16
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