IL_5NGM_043

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5NGM|1|AA|U|1249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_043 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.0913

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

5NGM|1|AA|C|1246
5NGM|1|AA|G|1247
5NGM|1|AA|U|1248
5NGM|1|AA|U|1249
5NGM|1|AA|G|1250
5NGM|1|AA|A|1251
5NGM|1|AA|A|1252
5NGM|1|AA|G|1253
*
5NGM|1|AA|U|1272
5NGM|1|AA|G|1273
5NGM|1|AA|G|1274
5NGM|1|AA|A|1275
5NGM|1|AA|G|1276

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AO

50S ribosomal protein L20