IL_5NGM_046

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

5NGM|1|AA|G|1369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_046 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.0835

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_83150.2

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

5NGM|1|AA|G|1356
5NGM|1|AA|G|1357
5NGM|1|AA|A|1358
5NGM|1|AA|A|1359
5NGM|1|AA|G|1360
*
5NGM|1|AA|C|1368
5NGM|1|AA|G|1369
5NGM|1|AA|C|1370

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AQ

50S ribosomal protein L22

Chain AR

50S ribosomal protein L23