IL_5NGM_047
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUAAG*CGAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NGM_047 not in the Motif Atlas
- Homologous match to IL_5J7L_292
- Geometric discrepancy: 0.087
- The information below is about IL_5J7L_292
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- UAA/GAN
- Motif group
- IL_89021.2
- Basepair signature
- cWW-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5NGM|1|AA|C|1388
5NGM|1|AA|U|1389
5NGM|1|AA|A|1390
5NGM|1|AA|A|1391
5NGM|1|AA|G|1392
*
5NGM|1|AA|C|1413
5NGM|1|AA|G|1414
5NGM|1|AA|A|1415
5NGM|1|AA|U|1416
5NGM|1|AA|G|1417
Current chains
- Chain AA
- 23S Ribosomal RNA
Nearby chains
- Chain A2
- 50S ribosomal protein L34
- Chain AC
- 50S ribosomal protein L2
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