IL_5NGM_050

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAUG*CUAG

Length

9 nucleotides

Bulged bases

5NGM|1|AA|U|1464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_050 not in the Motif Atlas

Homologous match to IL_4WF9_054

Geometric discrepancy: 0.2966

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5NGM|1|AA|C|1461
5NGM|1|AA|G|1462
5NGM|1|AA|A|1463
5NGM|1|AA|U|1464
5NGM|1|AA|G|1465
*
5NGM|1|AA|C|1624
5NGM|1|AA|U|1625
5NGM|1|AA|A|1626
5NGM|1|AA|G|1627

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains