IL_5NGM_055

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAAG*UGAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_055 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.5021

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5NGM|1|AA|G|1518
5NGM|1|AA|U|1519
5NGM|1|AA|A|1520
5NGM|1|AA|A|1521
5NGM|1|AA|G|1522
*
5NGM|1|AA|U|1558
5NGM|1|AA|G|1559
5NGM|1|AA|A|1560
5NGM|1|AA|G|1561
5NGM|1|AA|C|1562

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains