IL_5NGM_061

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACUCGG*CUGU

Length

10 nucleotides

Bulged bases

5NGM|1|AA|G|2019

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_061 not in the Motif Atlas

Geometric match to IL_4WF9_065

Geometric discrepancy: 0.0988

The information below is about IL_4WF9_065

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

5NGM|1|AA|A|1713
5NGM|1|AA|C|1714
5NGM|1|AA|U|1715
5NGM|1|AA|C|1716
5NGM|1|AA|G|1717
5NGM|1|AA|G|1718
*
5NGM|1|AA|C|2017
5NGM|1|AA|U|2018
5NGM|1|AA|G|2019
5NGM|1|AA|U|2020

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L3

Chain AI

50S ribosomal protein L14