IL_5NGM_073

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

5NGM|1|AA|C|2082, 5NGM|1|AA|U|2640

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_073 not in the Motif Atlas

Homologous match to IL_4WF9_079

Geometric discrepancy: 0.1246

The information below is about IL_4WF9_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

8

Unit IDs

5NGM|1|AA|A|2081
5NGM|1|AA|C|2082
5NGM|1|AA|G|2083
*
5NGM|1|AA|C|2639
5NGM|1|AA|U|2640
5NGM|1|AA|A|2641
5NGM|1|AA|U|2642

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L3

Chain AQ

50S ribosomal protein L22

Chain AZ

50S ribosomal protein L32