IL_5NGM_076

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAG*CGGG

Length

7 nucleotides

Bulged bases

5NGM|1|AA|G|2265

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_076 not in the Motif Atlas

Homologous match to IL_7A0S_077

Geometric discrepancy: 0.1437

The information below is about IL_7A0S_077

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5NGM|1|AA|U|2108
5NGM|1|AA|A|2109
5NGM|1|AA|G|2110
*
5NGM|1|AA|C|2263
5NGM|1|AA|G|2264
5NGM|1|AA|G|2265
5NGM|1|AA|G|2266

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L2

Chain AV

50S ribosomal protein L28