IL_5NGM_080

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAG*CAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_080 not in the Motif Atlas

Homologous match to IL_7RQB_088

Geometric discrepancy: 0.2913

The information below is about IL_7RQB_088

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5NGM|1|AA|C|2324
5NGM|1|AA|A|2325
5NGM|1|AA|G|2326
*
5NGM|1|AA|C|2344
5NGM|1|AA|A|2345
5NGM|1|AA|U|2346
5NGM|1|AA|A|2347
5NGM|1|AA|G|2348

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AF

50S ribosomal protein L5

Chain AM

50S ribosomal protein L18