IL_5NGM_089

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

5NGM|1|AA|G|2603, 5NGM|1|AA|A|2604

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_089 not in the Motif Atlas

Homologous match to IL_4WF9_095

Geometric discrepancy: 0.0748

The information below is about IL_4WF9_095

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

5NGM|1|AA|C|2537
5NGM|1|AA|U|2538
5NGM|1|AA|C|2539
*
5NGM|1|AA|G|2601
5NGM|1|AA|C|2602
5NGM|1|AA|G|2603
5NGM|1|AA|A|2604
5NGM|1|AA|G|2605

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L3

Chain AZ

50S ribosomal protein L32