IL_5NGM_093

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

5NGM|1|AA|G|2807

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_093 not in the Motif Atlas

Homologous match to IL_4WF9_099

Geometric discrepancy: 0.0775

The information below is about IL_4WF9_099

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.4

Basepair signature

cWW-tSH-tHW-tHS-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

5NGM|1|AA|U|2663
5NGM|1|AA|U|2664
5NGM|1|AA|G|2665
5NGM|1|AA|A|2666
5NGM|1|AA|G|2667
*
5NGM|1|AA|C|2801
5NGM|1|AA|A|2802
5NGM|1|AA|A|2803
5NGM|1|AA|G|2804
5NGM|1|AA|A|2805
5NGM|1|AA|U|2806
5NGM|1|AA|G|2807
5NGM|1|AA|A|2808
5NGM|1|AA|G|2809

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L3

Chain AH

50S ribosomal protein L13