IL_5NGM_117

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUGA*UCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_117 not in the Motif Atlas

Geometric match to IL_4WSM_372

Geometric discrepancy: 0.3887

The information below is about IL_4WSM_372

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16315.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

5NGM|1|Aa|U|187
5NGM|1|Aa|U|188
5NGM|1|Aa|G|189
5NGM|1|Aa|A|190
*
5NGM|1|Aa|U|201
5NGM|1|Aa|C|202
5NGM|1|Aa|A|203

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain At

30S ribosomal protein S20