3D structure

PDB id
5NGM (explore in PDB, NAKB, or RNA 3D Hub)
Description
2.9S structure of the 70S ribosome composing the S. aureus 100S complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GCAAU*AC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5NGM_122 not in the Motif Atlas
Geometric match to IL_5J7L_018
Geometric discrepancy: 0.0929
The information below is about IL_5J7L_018
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_03109.3
Basepair signature
cWW-cWS-tWH-cWW-L
Number of instances in this motif group
6

Unit IDs

5NGM|1|Aa|G|379
5NGM|1|Aa|C|380
5NGM|1|Aa|A|381
5NGM|1|Aa|A|382
5NGM|1|Aa|U|383
*
5NGM|1|Aa|A|397
5NGM|1|Aa|C|398

Current chains

Chain Aa
16S ribosomal RNA

Nearby chains

Chain Ap
30S ribosomal protein S16

Coloring options:


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