IL_5NGM_122
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCAAU*AC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NGM_122 not in the Motif Atlas
- Geometric match to IL_5J7L_018
- Geometric discrepancy: 0.0929
- The information below is about IL_5J7L_018
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_03109.3
- Basepair signature
- cWW-cWS-tWH-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
5NGM|1|Aa|G|379
5NGM|1|Aa|C|380
5NGM|1|Aa|A|381
5NGM|1|Aa|A|382
5NGM|1|Aa|U|383
*
5NGM|1|Aa|A|397
5NGM|1|Aa|C|398
Current chains
- Chain Aa
- 16S ribosomal RNA
Nearby chains
- Chain Ap
- 30S ribosomal protein S16
Coloring options: