3D structure

PDB id
5NGM (explore in PDB, NAKB, or RNA 3D Hub)
Description
2.9S structure of the 70S ribosome composing the S. aureus 100S complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GAAGAG*UGGUC
Length
11 nucleotides
Bulged bases
5NGM|1|Aa|A|673
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5NGM_136 not in the Motif Atlas
Geometric match to IL_8D29_010
Geometric discrepancy: 0.3769
The information below is about IL_8D29_010
Detailed Annotation
Partly complementary
Broad Annotation
Partly complementary
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

5NGM|1|Aa|G|669
5NGM|1|Aa|A|670
5NGM|1|Aa|A|671
5NGM|1|Aa|G|672
5NGM|1|Aa|A|673
5NGM|1|Aa|G|674
*
5NGM|1|Aa|U|748
5NGM|1|Aa|G|749
5NGM|1|Aa|G|750
5NGM|1|Aa|U|751
5NGM|1|Aa|C|752

Current chains

Chain Aa
16S ribosomal RNA

Nearby chains

Chain AA
Large subunit ribosomal RNA; LSU rRNA
Chain Af
30S ribosomal protein S6
Chain Ao
30S ribosomal protein S15
Chain Ar
30S ribosomal protein S18
Chain Au
30S ribosomal protein S21

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